GgaEX1065944 @ galGal3
Exon Skipping
Gene
ENSGALG00000003135 | Q90717_CHICK
Description
NA
Coordinates
chr6:10083280-10095673:+
Coord C1 exon
chr6:10083280-10083378
Coord A exon
chr6:10095387-10095485
Coord C2 exon
chr6:10095575-10095673
Length
99 bp
Sequences
Splice sites
3' ss Seq
TTTTCTTATGTCCATTCTAGATG
3' ss Score
11.21
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
AGTGGACTGACACCATTGCACTTGGCTGCTCAAGAGGACAGAGTCAATGTAGCAGAGGTTCTTGTTAACCAAGGAGCTGCTGTTGATGCTCAGACAAAG
Seq A exon
ATGGGATATACTCCCTTGCACGTTGGCTGCCACTACGGAAACATAAAGATTGTTAACTTCCTTCTGCAACATTCTGCAAAAATCAATGCCAAAACGAAG
Seq C2 exon
AACGGGTACACACCGCTGCACCAGGCTGCACAGCAGGGGCACACCCACATCATCAACGTTCTGCTCCAGCACGGTGCGGCGCCCAACGAGCTCACTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003135-'19-21,'19-20,20-21=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.030 A=0.030 C2=0.273
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PU(29.0=81.8)
A:
PF127962=Ank_2=PD(33.3=93.9)
C2:
PF127962=Ank_2=PD(33.3=93.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGACTGACACCATTGCACT
R:
GCTGGAGCAGAACGTTGATGA
Band lengths:
168-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]