BtaEX6105144 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000019052 | ANK3
Description
Bos taurus ankyrin 3, node of Ranvier (ankyrin G) (ANK3), mRNA. [Source:RefSeq mRNA;Acc:NM_001105620]
Coordinates
chr28:15960803-15967703:-
Coord C1 exon
chr28:15967605-15967703
Coord A exon
chr28:15960997-15961095
Coord C2 exon
chr28:15960803-15960901
Length
99 bp
Sequences
Splice sites
3' ss Seq
ATATATATATATAATTACAGATG
3' ss Score
5.33
5' ss Seq
AAGGTAAAC
5' ss Score
8.14
Exon sequences
Seq C1 exon
AGTGGCCTGGCCCCACTCCATTTGGCTGCGCAAGAAGACAGAGTGAATGTGGCCGAAGTCCTTGTAAACCAGGGGGCACATGTGGACGCCCAGACAAAG
Seq A exon
ATGGGATACACACCGCTACATGTAGGCTGCCACTATGGAAACATCAAGATTGTTAACTTCCTGCTCCAGCATTCTGCAAAAGTAAATGCCAAAACAAAG
Seq C2 exon
AATGGGTATACACCATTACACCAAGCAGCTCAACAGGGACACACCCATATAATCAATGTGTTGCTTCAAAACAATGCCTCCCCCAATGAACTCACTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019052-'19-23,'19-22,20-23=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.061 C2=0.333
Domain overlap (PFAM):
C1:
PF127962=Ank_2=FE(34.4=100)
A:
PF127962=Ank_2=PD(33.3=93.9)
C2:
PF0002325=Ank=WD(100=100.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCATTTGGCTGCGCAAGAA
R:
GTTCATTGGGGGAGGCATTGT
Band lengths:
175-274
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]