MmuEX0004920 @ mm9
Exon Skipping
Gene
ENSMUSG00000069601 | Ank3
Description
ankyrin 3, epithelial [Source:MGI Symbol;Acc:MGI:88026]
Coordinates
chr10:69360789-69395244:+
Coord C1 exon
chr10:69360789-69360887
Coord A exon
chr10:69360976-69361074
Coord C2 exon
chr10:69395142-69395244
Length
99 bp
Sequences
Splice sites
3' ss Seq
CTCCATTGTTTCTTCTGCAGAAT
3' ss Score
9.69
5' ss Seq
GTGGTGAGC
5' ss Score
6.64
Exon sequences
Seq C1 exon
ATGGGCTACACCCCGCTCCATGTGGGCTGTCACTATGGAAATATCAAAATAGTCAATTTTCTGCTGCAGCATTCTGCAAAAGTTAATGCCAAGACGAAG
Seq A exon
AATGGATACACAGCACTGCACCAGGCTGCTCAGCAGGGCCACACGCATATCATCAATGTCTTGCTTCAGAACAACGCCTCCCCCAATGAACTCACTGTG
Seq C2 exon
CCTCCGCTCCTTCAGTTCGGATAGGTCCTACACCTTGAACAGAAGCTCCTACGCAAGGGACAGCATGATGATAGAGGAACTTCTGGTACCATCCAAAGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000069601_MULTIEX1-19/25=18-25
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.028 A=0.259 C2=0.000
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PD(33.3=93.9),PF127962=Ank_2=PU(6.2=12.1)
A:
PF127962=Ank_2=FE(50.8=100)
C2:
NO
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATGTGGGCTGTCACTATGG
R:
TGGATGGTACCAGAAGTTCCTCT
Band lengths:
177-276
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types