BtaEX6105145 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000019052 | ANK3
Description
Bos taurus ankyrin 3, node of Ranvier (ankyrin G) (ANK3), mRNA. [Source:RefSeq mRNA;Acc:NM_001105620]
Coordinates
chr28:15960184-15961095:-
Coord C1 exon
chr28:15960997-15961095
Coord A exon
chr28:15960803-15960901
Coord C2 exon
chr28:15960184-15960279
Length
99 bp
Sequences
Splice sites
3' ss Seq
CTTCCATCTTCCTTCTACAGAAT
3' ss Score
11.23
5' ss Seq
GTGGTAAGA
5' ss Score
8.24
Exon sequences
Seq C1 exon
ATGGGATACACACCGCTACATGTAGGCTGCCACTATGGAAACATCAAGATTGTTAACTTCCTGCTCCAGCATTCTGCAAAAGTAAATGCCAAAACAAAG
Seq A exon
AATGGGTATACACCATTACACCAAGCAGCTCAACAGGGACACACCCATATAATCAATGTGTTGCTTCAAAACAATGCCTCCCCCAATGAACTCACTGTG
Seq C2 exon
AACGGGAACACTGCCCTGGCCATTGCCCGGAGGCTTGGCTACATCTCAGTGGTGGACACCCTGAAGGTGGTGACCGAAGAGACCGTGACCACAACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019052-'20-24,'20-23,21-24=AN
Average complexity
A_S
Mappability confidence:
88%=100=75%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.061 A=0.333 C2=0.188
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PD(33.3=93.9)
A:
PF0002325=Ank=WD(100=100.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACACCGCTACATGTAGGCTG
R:
TCTCTTCGGTCACCACCTTCA
Band lengths:
173-272
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]