HsaEX6088519 @ hg19
Exon Skipping
Gene
ENSG00000151150 | ANK3
Description
ankyrin 3, node of Ranvier (ankyrin G) [Source:HGNC Symbol;Acc:494]
Coordinates
chr10:61932066-61932944:-
Coord C1 exon
chr10:61932846-61932944
Coord A exon
chr10:61932658-61932756
Coord C2 exon
chr10:61932066-61932161
Length
99 bp
Sequences
Splice sites
3' ss Seq
CTTCCATCTTCCTTCTACAGAAT
3' ss Score
11.23
5' ss Seq
GTGGTAAGC
5' ss Score
8.15
Exon sequences
Seq C1 exon
ATGGGATACACACCACTGCATGTGGGCTGCCACTATGGAAATATCAAGATTGTTAATTTCCTGCTCCAGCATTCTGCAAAAGTTAATGCCAAAACAAAG
Seq A exon
AATGGGTATACGCCATTACATCAAGCAGCACAGCAGGGGCATACGCATATAATAAATGTCTTACTTCAGAACAACGCCTCCCCCAATGAACTCACTGTG
Seq C2 exon
AATGGGAATACTGCCCTTGGCATTGCCCGGCGCCTCGGCTACATCTCAGTAGTGGACACCCTGAAGATAGTGACCGAAGAGACCATGACCACAACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000151150-'26-30,'26-29,27-30=AN
Average complexity
A_S
Mappability confidence:
88%=75=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.061 A=0.421 C2=0.210
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PD(33.3=93.9)
A:
PF0002325=Ank=WD(100=100.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGGCTGCCACTATGGAAAT
R:
TGTGGTCATGGTCTCTTCGGT
Band lengths:
171-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)