GgaEX0004063 @ galGal3
Exon Skipping
Gene
ENSGALG00000003135 | Q90717_CHICK
Description
NA
Coordinates
chr6:10095387-10096142:+
Coord C1 exon
chr6:10095387-10095485
Coord A exon
chr6:10095575-10095673
Coord C2 exon
chr6:10096047-10096142
Length
99 bp
Sequences
Splice sites
3' ss Seq
CCCTTTCCTTGTACCTGCAGAAC
3' ss Score
11.86
5' ss Seq
GTGGTAAGT
5' ss Score
10.36
Exon sequences
Seq C1 exon
ATGGGATATACTCCCTTGCACGTTGGCTGCCACTACGGAAACATAAAGATTGTTAACTTCCTTCTGCAACATTCTGCAAAAATCAATGCCAAAACGAAG
Seq A exon
AACGGGTACACACCGCTGCACCAGGCTGCACAGCAGGGGCACACCCACATCATCAACGTTCTGCTCCAGCACGGTGCGGCGCCCAACGAGCTCACTGTG
Seq C2 exon
AATGGAAACACTGCCCTCGCCATCGCGAAGCGACTTGGCTACATTTCAGTCGTTGACACATTGAAGGTGGTGACAGAGGAGACCATGACTACAATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003135-'20-22,'20-21,21-22
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.030 A=0.273 C2=0.012
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PD(33.3=93.9)
A:
PF127962=Ank_2=PD(33.3=93.9)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATACTCCCTTGCACGTTGGC
R:
GGTCTCCTCTGTCACCACCTT
Band lengths:
177-276
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]