HsaEX6088519 @ hg38
Exon Skipping
Gene
ENSG00000151150 | ANK3
Description
ankyrin 3 [Source:HGNC Symbol;Acc:HGNC:494]
Coordinates
chr10:60172308-60173186:-
Coord C1 exon
chr10:60173088-60173186
Coord A exon
chr10:60172900-60172998
Coord C2 exon
chr10:60172308-60172403
Length
99 bp
Sequences
Splice sites
3' ss Seq
CTTCCATCTTCCTTCTACAGAAT
3' ss Score
11.23
5' ss Seq
GTGGTAAGC
5' ss Score
8.15
Exon sequences
Seq C1 exon
ATGGGATACACACCACTGCATGTGGGCTGCCACTATGGAAATATCAAGATTGTTAATTTCCTGCTCCAGCATTCTGCAAAAGTTAATGCCAAAACAAAG
Seq A exon
AATGGGTATACGCCATTACATCAAGCAGCACAGCAGGGGCATACGCATATAATAAATGTCTTACTTCAGAACAACGCCTCCCCCAATGAACTCACTGTG
Seq C2 exon
AATGGGAATACTGCCCTTGGCATTGCCCGGCGCCTCGGCTACATCTCAGTAGTGGACACCCTGAAGATAGTGACCGAAGAGACCATGACCACAACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000151150-'64-56,'64-55,65-56
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.061 A=0.424 C2=0.211
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PD(33.3=93.9)
A:
PF0002325=Ank=WD(100=100.0)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGGCTGCCACTATGGAAAT
R:
TGTGGTCATGGTCTCTTCGGT
Band lengths:
171-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains