RnoEX0009365 @ rn6
Exon Skipping
Gene
ENSRNOG00000053288 | Ank3
Description
ankyrin 3 [Source:RGD Symbol;Acc:620157]
Coordinates
chr20:20352238-20353302:+
Coord C1 exon
chr20:20352238-20352336
Coord A exon
chr20:20352425-20352523
Coord C2 exon
chr20:20353207-20353302
Length
99 bp
Sequences
Splice sites
3' ss Seq
CTCTGTTCTTTCTTCTGCAGAAT
3' ss Score
12.24
5' ss Seq
GTGGTGAGC
5' ss Score
6.64
Exon sequences
Seq C1 exon
ATGGGCTACACGCCGCTCCATGTGGGCTGTCACTATGGAAACATCAAAATAGTCAATTTTCTGCTGCAGCATTCTGCGAAAGTTAATGCCAAGACAAAG
Seq A exon
AATGGATACACGCCACTGCACCAGGCAGCCCAGCAGGGCCACACACACATCATCAACGTCCTGCTCCAGAACAACGCTTCCCCCAATGAACTCACTGTG
Seq C2 exon
AATGGGAACACAGCCCTGGCCATCGCCCGACGCCTTGGCTACATCTCGGTGGTTGACACCCTAAAGGTCGTGACAGAGGAAATTATGACCACCACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000053288-'33-39,'33-37,35-39
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.061 A=0.356 C2=0.033
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PD(33.3=93.9),PF127962=Ank_2=PU(4.8=9.1)
A:
PF0002325=Ank=WD(100=100.0)
C2:
PF127962=Ank_2=PD(38.7=75.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTACACGCCGCTCCATGTG
R:
TCCTCTGTCACGACCTTTAGGG
Band lengths:
174-273
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]