DreEX6067859 @ danRer10
Exon Skipping
Gene
ENSDARG00000077582 | ank3b
Description
ankyrin 3b [Source:ZFIN;Acc:ZDB-GENE-060621-2]
Coordinates
chr12:7677202-7680710:-
Coord C1 exon
chr12:7680612-7680710
Coord A exon
chr12:7680392-7680490
Coord C2 exon
chr12:7677202-7677297
Length
99 bp
Sequences
Splice sites
3' ss Seq
TGTTTCCCTCTCATGTTCAGAAT
3' ss Score
8.81
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
Exon sequences
Seq C1 exon
ATGGGATATACACCGCTGCATGTGGCCTGTCACTATGGCAATGTGAAGATGGTGCATTTTCTCCTGAAGAACCAGGCGAAAGTCAACGCCAAAACTAAG
Seq A exon
AATGGATACACACCTCTCCATCAGGCTGCTCAGCAGGGTCACACACACATCATTAACCTGCTGCTGCAGCACGGAGCTTCCCCTAATGAGCTGACAGTG
Seq C2 exon
AATGGAAACACTGCCTTAGCTATTGCCAGGCGCCTGGGTTACATCTCTGTGGTCGACACGCTCAAAGCAGTGACAGAGGAGACGCACACTACTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000077582-'28-24,'28-23,29-24=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.061 A=0.333 C2=0.250
Domain overlap (PFAM):
C1:
PF127962=Ank_2=FE(34.4=100)
A:
PF127962=Ank_2=PD(33.3=93.9)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCTGTCACTATGGCAATGT
R:
AGTAGTGTGCGTCTCCTCTGT
Band lengths:
169-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]