DreEX0013105 @ danRer10
Exon Skipping
Gene
ENSDARG00000061736 | ank3a
Description
ankyrin 3a [Source:ZFIN;Acc:ZDB-GENE-060621-1]
Coordinates
chr17:20759500-20760852:-
Coord C1 exon
chr17:20760754-20760852
Coord A exon
chr17:20760342-20760539
Coord C2 exon
chr17:20759500-20759598
Length
198 bp
Sequences
Splice sites
3' ss Seq
TCCATAACAATGATCTGCAGGAT
3' ss Score
4.69
5' ss Seq
AAGGTCTAA
5' ss Score
-0.51
Exon sequences
Seq C1 exon
AGAGGGGAAACAGCTTTGCACATGGCAGCAAGAGCCGGCCAGATTGATGTTGTCAGATACCTGCTACAGAATGGTGCTAAAGTGGACATCAAAGCCAAG
Seq A exon
GATGACCAAACAGCTCTGCATATAGCCAGTCGTCTGGGGAAGCTGGAGATTGTACAGCAGTTGCTTCAGAAGGGGGCTTTACCTAATGCTGCCACCACCTCTGGCTACACCCCTCTGCACCTTTCTGCCCGTGAGGGTCATCAGGAGATAGCAGCTCTTCTGCTGGAGCAGGGGTCTTCTCTCTCTGCAGCCACTAAG
Seq C2 exon
AAAGGGTTCACTCCTCTACATGTGGCTGCAAAGTACGGGCAGCTGGAAGTGGCCAATCTTCTACTGCAGAAGAAAGCTGCACCAGATGCTGCAGGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061736-'17-18,'17-17,18-18
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.152 A=0.045 C2=0.000
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PD(44.3=93.9)
A:
PF0002325=Ank=WD(100=50.0),PF0002325=Ank=WD(100=50.0)
C2:
PF127962=Ank_2=PU(29.0=81.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGGGGAAACAGCTTTGCAC
R:
CATCTGGTGCAGCTTTCTTCTG
Band lengths:
187-385
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]