MmuEX0004914 @ mm10
Exon Skipping
Gene
ENSMUSG00000069601 | Ank3
Description
ankyrin 3, epithelial [Source:MGI Symbol;Acc:MGI:88026]
Coordinates
chr10:69850106-69898326:+
Coord C1 exon
chr10:69850106-69850204
Coord A exon
chr10:69882361-69882558
Coord C2 exon
chr10:69898228-69898326
Length
198 bp
Sequences
Splice sites
3' ss Seq
TGTTTCTACCTTGCATCTAGGAT
3' ss Score
8.58
5' ss Seq
AAGGTATAA
5' ss Score
7.08
Exon sequences
Seq C1 exon
AATGACATCACTCCCTTACACGTTGCCTCGAAGCGAGGAAATGCAAATATGGTGAAGCTATTGCTGGACCGGGGTGCGAAGATCGATGCCAAGACCAGG
Seq A exon
GATGACCAGACTCCACTCCACATCTCAGCCCGACTTGGGAAAGCTGACATAGTGCAACAACTGTTACAGCAAGGAGCATCCCCCAATGCAGCAACAACTTCTGGGTACACCCCCCTTCACCTTGCGGCCAGAGAGGGGCATGAGGATGTAGCTGCGTTCCTCCTGGATCATGGAGCATCTTTATCCATAACAACAAAG
Seq C2 exon
AATGGATACACAGCACTGCACCAGGCTGCTCAGCAGGGCCACACGCATATCATCAATGTCTTGCTTCAGAACAACGCCTCCCCCAATGAACTCACTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000069601-'36-61,'36-51,47-61=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.006 A=0.242 C2=0.266
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PD(0.1=0.0),PF136371=Ank_4=PU(56.6=90.9)
A:
PF127962=Ank_2=PD(88.9=97.0)
C2:
PF127962=Ank_2=FE(50.8=100)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATCACTCCCTTACACGTTGC
R:
CACAGTGAGTTCATTGGGGGA
Band lengths:
194-392
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types