GgaEX6039835 @ galGal4
Exon Skipping
Gene
ENSGALG00000003135 | chAnk3
Description
ankyrin 3, node of Ranvier (ankyrin G) [Source:RefSeq peptide;Acc:NP_001264026]
Coordinates
chr6:8413520-8416102:+
Coord C1 exon
chr6:8413520-8413618
Coord A exon
chr6:8415277-8415474
Coord C2 exon
chr6:8416004-8416102
Length
198 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTCCTTTATGTTTAGGAT
3' ss Score
10.46
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
AGAGGAGAAACTGCACTGCACATGGCTGCTAGAGCTGGCCAAACAGAGGTTGTTCGATACCTAGTACAAAATGGAGCTCAGGTGGAGGCTAAAGCTAAG
Seq A exon
GATGACCAAACGCCGCTGCACATTTCTGCTCGACTGGGCAAAGCAGATATAGTGCAGCAGCTGTTACAGCAAGGAGCATCTCCAAATGCAGCTACAACTTCTGGCTATACGCCCTTGCACCTTTCTGCTCGAGAAGGCCATGAAGATGTAGCTTCTGTTCTTTTGGAGCATGGCGCATCTTTAGCTATTATTACCAAG
Seq C2 exon
AAAGGATTTACTCCTCTACACGTGGCTGCAAAATATGGGAAAATCGAGGTAGCAAACCTCCTGCTTCAGAAGAATGCATCTCCTGATGCTTCTGGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003135-'35-20,'35-19,36-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.273 A=0.273 C2=0.091
Domain overlap (PFAM):
C1:
PF136371=Ank_4=PD(38.9=63.6),PF127962=Ank_2=PU(7.0=15.2)
A:
PF127962=Ank_2=PD(90.1=97.0)
C2:
PF127962=Ank_2=PU(29.0=81.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGAGAAACTGCACTGCACA
R:
CTTTCCAGAAGCATCAGGAGA
Band lengths:
197-395
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]