DreEX6067855 @ danRer10
Exon Skipping
Gene
ENSDARG00000077582 | ank3b
Description
ankyrin 3b [Source:ZFIN;Acc:ZDB-GENE-060621-2]
Coordinates
chr12:7697125-7731343:-
Coord C1 exon
chr12:7731245-7731343
Coord A exon
chr12:7723680-7723877
Coord C2 exon
chr12:7697125-7697223
Length
198 bp
Sequences
Splice sites
3' ss Seq
GTGTGTGTGTGTGTTTATAGGAC
3' ss Score
10.33
5' ss Seq
AAGGTCAGT
5' ss Score
8.68
Exon sequences
Seq C1 exon
AGGGGAGAGACGGCGCTCCATATGGCTGCCAGGGCAGGACAGGCAAACGTGGTGAAATTCCTGGTGGCGAATGGAGCAGATGTGGACGCAAAAGCCAAG
Seq A exon
GACGATCAGACCCCGTTGCATATATCCAGTCGTCTGGGAAAACCAGACATTGTCCAGCAACTGCTGCAGCATGGGGCTTTACCCGACTCCACCACCACGTCTGGATACACGCCACTGCACCTGGCTGCACGGGACGGCCACAAAGACGTGGCATCCATCCTGCTGGACAACGGAGCCTCTCTTGGCATTACTACCAAG
Seq C2 exon
AAGGGATTCACTCCACTGCATGTTGCAGCCAAATACGGGAAGATGGAAGTTGCTAACTTACTGCTACAGAAGCGAGCACCGCCTGACGCAGCTGGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000077582-'21-18,'21-17,22-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.242 A=0.394 C2=0.091
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PD(44.3=93.9)
A:
PF127962=Ank_2=PD(33.3=47.0),PF0002325=Ank=WD(100=50.0)
C2:
PF127962=Ank_2=PD(33.3=93.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAGACGGCGCTCCATATG
R:
CTTTCCAGCTGCGTCAGGC
Band lengths:
194-392
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]