BtaEX6105141 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000019052 | ANK3
Description
Bos taurus ankyrin 3, node of Ranvier (ankyrin G) (ANK3), mRNA. [Source:RefSeq mRNA;Acc:NM_001105620]
Coordinates
chr28:15981031-15996090:-
Coord C1 exon
chr28:15995992-15996090
Coord A exon
chr28:15982745-15982942
Coord C2 exon
chr28:15981031-15981129
Length
198 bp
Sequences
Splice sites
3' ss Seq
ATTCTTACCTTGCCCTTTAGGAT
3' ss Score
9.5
5' ss Seq
AAGGTATGC
5' ss Score
9.55
Exon sequences
Seq C1 exon
AGAGGAGAGACAGCCCTGCACATGGCAGCTCGGTCCGGTCAGGCTGAAGTCGTGCGGTATCTGGTGCAAGACGGAGCTCAGGTAGAAGCTAAAGCTAAG
Seq A exon
GATGACCAAACCCCTCTCCACATTTCTGCCCGACTGGGGAAAGCGGATATAGTACAGCAGTTGTTGCAGCAAGGAGCATCTCCAAATGCAGCGACAACTTCGGGGTACACCCCGCTGCACCTTGCAGCGCGAGAGGGACACGAAGACGTCGCAGCTTTCCTTTTGGATCATGGCGCATCTTTAGCTATAACAACAAAG
Seq C2 exon
AAAGGATTTACTCCCCTTCATGTGGCAGCAAAATATGGGAAGCTTGAAGTAGCCAATCTCCTGCTGCAGAAAAGTGCATCTCCAGATGCTGCTGGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019052-'12-16,'12-15,15-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.273 A=0.242 C2=0.030
Domain overlap (PFAM):
C1:
PF136371=Ank_4=PD(38.9=63.6),PF127962=Ank_2=PU(8.3=18.2)
A:
PF127962=Ank_2=PD(88.9=97.0)
C2:
PF127962=Ank_2=PU(29.0=81.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGAGAGACAGCCCTGCA
R:
CATCTGGAGATGCACTTTTCTGC
Band lengths:
186-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]