Special

MmuALTA0001824-2/2 @ mm9

Alternative 3'ss

Gene
ENSMUSG00000000049 | Apoh
Description
apolipoprotein H [Source:MGI Symbol;Acc:MGI:88058]
Coordinates
chr11:108242478-108256721:+
Coord C1 exon
chr11:108242478-108242710
Coord A exon
chr11:108256616-108256618
Coord C2 exon
chr11:108256619-108256721
Length
3 bp
Sequences
Splice sites
5' ss Seq
CATGTAAGC
5' ss Score
5.61
3' ss Seq
ATTTGTGTGCCTCTCTTCAGCAG
3' ss Score
8.05
Exon sequences
Seq C1 exon
GTCTTACAGTGGAAGGTTACTAGGGGTGGGGCTTGAGGATGTTTAGCCTGCTCCCACTTCCTGTTCATGGCTTCATGACTGCAGATATAATGTGACCAGCTGCCTTCTGTTCCAACCTATGAGTAAAGAATGGCTGGCAGGATGGCTCCGAAGATACAGGCTCGTGAGCTGCAAACCTAGGGACCTGAGATTCATCCCCAGATCTCCTGAGATTCATCTTCTGACTTTGACAT
Seq A exon
CAG
Seq C2 exon
AAGACACCACTTTGGTGAAGCTGGTGGGACGCATCCGCAATGGTTTCCCCGGTGCTCGCCTTGTTCTCCGCCTTCCTCTGCCATGTTGCTATTGCAGGACGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000000049-1-4,1-3-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact





	

	
5' UTR





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=NA A=NA C2=0.000
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
NA

							
A:
NA

							
C2:
NO

						

					

				








    
Main Inclusion Isoform:
ENSMUSP00000115516





     
                   









    
Main Skipping Isoform:
ENSMUSP00000000049





     
      









    
Other Inclusion Isoforms:
ENSMUSP00000123486
          









    
Other Skipping Isoforms:
ENSMUSP00000114214
  



Associated events







Other assemblies


mm10




Conservation


Human
(hg38)
No conservation detected
Human
(hg19)
chr17:64225541-64225542 
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
chr19:63243067-63243068 
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
CTCGTGAGCTGCAAACCTAGG

				
R: 
GTCCCACCAGCTTCACCAAAG

				
Band lengths: 
103-106

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






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