MmuALTA0001824-2/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000000049 | Apoh
Description
apolipoprotein H [Source:MGI Symbol;Acc:MGI:88058]
Coordinates
chr11:108381164-108395407:+
Coord C1 exon
chr11:108381164-108381396
Coord A exon
chr11:108395302-108395304
Coord C2 exon
chr11:108395305-108395407
Length
3 bp
Sequences
Splice sites
5' ss Seq
CATGTAAGC
5' ss Score
5.61
3' ss Seq
ATTTGTGTGCCTCTCTTCAGCAG
3' ss Score
8.05
Exon sequences
Seq C1 exon
GTCTTACAGTGGAAGGTTACTAGGGGTGGGGCTTGAGGATGTTTAGCCTGCTCCCACTTCCTGTTCATGGCTTCATGACTGCAGATATAATGTGACCAGCTGCCTTCTGTTCCAACCTATGAGTAAAGAATGGCTGGCAGGATGGCTCCGAAGATACAGGCTCGTGAGCTGCAAACCTAGGGACCTGAGATTCATCCCCAGATCTCCTGAGATTCATCTTCTGACTTTGACAT
Seq A exon
CAG
Seq C2 exon
AAGACACCACTTTGGTGAAGCTGGTGGGACGCATCCGCAATGGTTTCCCCGGTGCTCGCCTTGTTCTCCGCCTTCCTCTGCCATGTTGCTATTGCAGGACGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000000049-3-5,3-4-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCGTGAGCTGCAAACCTAGG
R:
GTCCCACCAGCTTCACCAAAG
Band lengths:
103-106
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types