MmuEX1004115 @ mm10
Exon Skipping
Gene
ENSMUSG00000000049 | Apoh
Description
apolipoprotein H [Source:MGI Symbol;Acc:MGI:88058]
Coordinates
chr11:108381164-108395992:+
Coord C1 exon
chr11:108381164-108381396
Coord A exon
chr11:108395305-108395407
Coord C2 exon
chr11:108395816-108395992
Length
103 bp
Sequences
Splice sites
3' ss Seq
TGTGTGCCTCTCTTCAGCAGAAG
3' ss Score
6.95
5' ss Seq
GGAGTGAGT
5' ss Score
6.05
Exon sequences
Seq C1 exon
GTCTTACAGTGGAAGGTTACTAGGGGTGGGGCTTGAGGATGTTTAGCCTGCTCCCACTTCCTGTTCATGGCTTCATGACTGCAGATATAATGTGACCAGCTGCCTTCTGTTCCAACCTATGAGTAAAGAATGGCTGGCAGGATGGCTCCGAAGATACAGGCTCGTGAGCTGCAAACCTAGGGACCTGAGATTCATCCCCAGATCTCCTGAGATTCATCTTCTGACTTTGACAT
Seq A exon
AAGACACCACTTTGGTGAAGCTGGTGGGACGCATCCGCAATGGTTTCCCCGGTGCTCGCCTTGTTCTCCGCCTTCCTCTGCCATGTTGCTATTGCAGGACGGA
Seq C2 exon
TCTGTCCGAAGCCGGATGACCTACCATTTGCTACGGTTGTCCCCTTAAAGACATCCTACGACCCTGGGGAGCAGATTGTCTACTCCTGCAAGCCAGGCTACGTGTCCAGGGGAGGGATGAGACGGTTTACCTGTCCTCTCACAGGAATGTGGCCCATCAACACCCTGAGATGTGTCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000000049_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0008415=Sushi=PU(93.5=96.7),PF0008415=Sushi=PU(5.0=5.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCGTGAGCTGCAAACCTAGG
R:
CATCTCAGGGTGTTGATGGGC
Band lengths:
245-348
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types