MmuALTA0002412-2/3 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000069895 | Atxn1l
Description
ataxin 1-like [Source:MGI Symbol;Acc:MGI:3694797]
Coordinates
chr8:109733516-109735363:-
Coord C1 exon
chr8:109735305-109735363
Coord A exon
chr8:109733743-109733745
Coord C2 exon
chr8:109733516-109733742
Length
3 bp
Sequences
Splice sites
5' ss Seq
CAGGTAATA
5' ss Score
8.55
3' ss Seq
GCCTCTGGTTTATTCCCTAGCAG
3' ss Score
6.83
Exon sequences
Seq C1 exon
GCTCCCAAACCAGAGGGGAGGACACGTACTGCAGCTGCTCAGCCCCACCAGACGCGCAG
Seq A exon
CAG
Seq C2 exon
ATGTGGGCACCACAACCAGCAGCAGAGCGGGGTGCAGGGGAACCACAGAGAAGTCACTTCTGATGCCCGAAGGAGCGCGTAAACTCCATCCAGGCTCCGGGAACACAAAGCAATATGAAACCTGTTCATGAGCGGAGTCAGGAATGCCTTCCACCAAAGAAACGAGACCTCCCTGTGACCAGCGAGGATATGGGGAGAACTACCAGCTGCTCCACAAACCACACACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000069895-3-5,3-4,3-3-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF085177=AXH=WD(100=16.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAGGGGAGGACACGTACTG
R:
TGACTTCTCTGTGGTTCCCCT
Band lengths:
105-108
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types