MmuALTA0002412-2/3 @ mm9
Alternative 3'ss
Gene
ENSMUSG00000069895 | Atxn1l
Description
ataxin 1-like [Source:MGI Symbol;Acc:MGI:3694797]
Coordinates
chr8:112257542-112259263:-
Coord C1 exon
chr8:112259205-112259263
Coord A exon
chr8:112257643-112257645
Coord C2 exon
chr8:112257542-112257642
Length
3 bp
Sequences
Splice sites
5' ss Seq
CAGGTAATA
5' ss Score
8.55
3' ss Seq
GCCTCTGGTTTATTCCCTAGCAG
3' ss Score
6.83
Exon sequences
Seq C1 exon
GCTCCCAAACCAGAGGGGAGGACACGTACTGCAGCTGCTCAGCCCCACCAGACGCGCAG
Seq A exon
CAG
Seq C2 exon
ATGTGGGCACCACAACCAGCAGCAGAGCGGGGTGCAGGGGAACCACAGAGAAGTCACTTCTGATGCCCGAAGGAGCGCGTAAACTCCATCCAGGCTCCGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000069895-2-5,2-4,2-3-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF085177=AXH=WD(100=16.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAGGGGAGGACACGTACTG
R:
TGACTTCTCTGTGGTTCCCCT
Band lengths:
105-108
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: