MmuALTA0002660-2/2 @ mm9
Alternative 3'ss
Gene
ENSMUSG00000040054 | Baz2a
Description
bromodomain adjacent to zinc finger domain, 2A [Source:MGI Symbol;Acc:MGI:2151152]
Coordinates
chr10:127528691-127533579:+
Coord C1 exon
chr10:127528691-127528832
Coord A exon
chr10:127533436-127533494
Coord C2 exon
chr10:127533495-127533579
Length
59 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
3' ss Seq
TACCCTTTGGCCACATTTAGGCT
3' ss Score
5.58
Exon sequences
Seq C1 exon
GGAAGCATACATTGGCTTTTTTGGGGTTTGCGAGTTCCCAGCCCATAGTTGGACAGGATCCAACAGTAGCCTTCAATTGAAGCAAGACCCAAGGACAGTGAGAATCTGGGTCCTAATCCTGAGTCCTGCCAGCCTGACATGG
Seq A exon
GCTAGATTCAGATCTTGACTGTGTGGAGCCAGAGCCAAGTCTCCTTTCCCCATGTGCAG
Seq C2 exon
GATTCTCTCCAACGACCAAGGTCCTGCAGATGACACCAGGAAAGCAGTGATCCAGGCAGGACCAGGTTGTCCCTACAGGACATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040054-1-6,1-4-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAGTTCCCAGCCCATAGTTG
R:
GTGTCATCTGCAGGACCTTGG
Band lengths:
148-207
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: