MmuALTA0002660-2/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000040054 | Baz2a
Description
bromodomain adjacent to zinc finger domain, 2A [Source:MGI Symbol;Acc:MGI:2151152]
Coordinates
chr10:128091577-128096523:+
Coord C1 exon
chr10:128091577-128091776
Coord A exon
chr10:128096380-128096438
Coord C2 exon
chr10:128096439-128096523
Length
59 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
3' ss Seq
TACCCTTTGGCCACATTTAGGCT
3' ss Score
5.58
Exon sequences
Seq C1 exon
ACCCCAGTCTGTCATACAGGGACATCACCCTACAGCAGTTCAGGCTGTGTCGTTCGCAGGAAGCATACATTGGCTTTTTTGGGGTTTGCGAGTTCCCAGCCCATAGTTGGACAGGATCCAACAGTAGCCTTCAATTGAAGCAAGACCCAAGGACAGTGAGAATCTGGGTCCTAATCCTGAGTCCTGCCAGCCTGACATGG
Seq A exon
GCTAGATTCAGATCTTGACTGTGTGGAGCCAGAGCCAAGTCTCCTTTCCCCATGTGCAG
Seq C2 exon
GATTCTCTCCAACGACCAAGGTCCTGCAGATGACACCAGGAAAGCAGTGATCCAGGCAGGACCAGGTTGTCCCTACAGGACATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040054-0-5,0-4-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.500 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAGTTCCCAGCCCATAGTTG
R:
GTGTCATCTGCAGGACCTTGG
Band lengths:
148-207
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types