MmuINT1005367 @ mm10
Intron Retention
Gene
ENSMUSG00000040054 | Baz2a
Description
bromodomain adjacent to zinc finger domain, 2A [Source:MGI Symbol;Acc:MGI:2151152]
Coordinates
chr10:128092460-128096523:+
Coord C1 exon
chr10:128092460-128092850
Coord A exon
chr10:128092851-128096438
Coord C2 exon
chr10:128096439-128096523
Length
3588 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
TCTCCTTTCCCCATGTGCAGGAT
3' ss Score
10.84
Exon sequences
Seq C1 exon
GCCTCCTTGAATCTTTGTGGCTCCCACTGTCTCTCCAGCCTCCTTTGTGAATAAGTCTTAGCTGGGCGCCCCGTGCCGGCAAAAAGAGCTCTTCAAGTACTCCAGTTCAGACCCACCGCTGTCCCCAACTACGCCGCAGAAGTTTCTGTCTTTTCCTGCATCTGGGATCCTTCCTGGTTCTGGCCCCTAGGAGACGCCACCCGCCGTCCCCTCCCCCAGCGGAGCCTTCGCGACAGCCGTCCCTGAGCGCTCGTCCTCACCCGGGTGGCTCCTGCCCCTTTAAGCGCCGCCCCCCCCCCCTCCGCCGCCGGCCTCGGGCTGGGGGAGGAGGCGCCGCCGCCCGGCTCGGCCACCTGCGCCGCCGCCGCCGCCCGGCCCGGCCCTGCTTCAG
Seq A exon
GTGAGGCCCGGCATCCGCCTCCAGGCCCGGGGTCCAGGGCAGGGCGTCCCCGCAGCCGCTTCCTCCCCTGGGATCCAAGCTCTGACCTTCCCTGCGCCCGCTGCCCTTGCTCTCTCCCCCGCCCTGCCTCCTCGCCCGTTCCTCCCCTGTCCTCTGCGCCCGGGATCCGGAGGCTTCTCACGCCTCTCCGCCATCCTCTCCCGGGAACCCCTCCTATTCCGGCCCTGGATCTCCCCTCCCCCGCGCCTCCCTCGCCAGAAAGCTCTCCCGCGGTCTGGGTTTCGCCTCCTCTTCTCTGGAACTAGCGCTTTCCCACGCCATCCTAACCCCGGAGGGGGGGGGAGATAACCGCCACCCCAACCCCTCTCCTGGTAGTGCGGGGGGCGGGGGGTACGACGCACGTTACGGGCGCTGTCCGCCCTGCTCCGCTCACCCTTCAAGTTCAGCTAAGTCTCACCTAAAGCTTTTCTTGCCGAGTTTGGGGTCGGACCCGAGCACCGCCCCCTGATCTCGGTGGGAAGGGCGCTCGGCCCCGCTGGAGCTGGCCCCTCCCCCTAGTCCGGGCGCCGGGGGCAGCGGCGCTGCGGGAACCTTGTGATACTCCGCTTCAGCGGCTGTTGCGGCAGAACAAGACTGGGGCTAAGTCTCTAAGGGATTGGGGGTGCTGGGTAAGGCAAAGGAAGCCCAACCTTCTCTATTTCAGGTTACTCCAGAAAACAAAACAAACAAAAACCCCGAGATGTCACTGTCTTATATGCCTATCATATGCCCAGCTGTCCGTTGGGGAATTTGGAGACTAAATCCGAGGGGCGCAGACCCACTTGGAGAAGGGGAGGGGTTACAATCTTTTTGGCATATTATGAGAGAACCTAACCTTACCAAAATACGGTGAGATTGTCTCCTCCGAACCTGAGTGCCGAAAAGGAACCAATGGGAATTGCTACAGGGCCAAGAGCTGTGGCTAAGGCAAGATCGGTTCAGTCATGGAGTGGGAGGTCTTTATAATTACCCTACCTTCAATAGGAAATACTCTTTCCATCCAGCTGAGCCCCGAGCTCCTTCTCTAGTGCCCCTGCCTCCAGAATTAGTAGAATGGGTGTCAGGGTTTGTCTTATACTACTCTGAGTCACAACTAAAGGTGCTGGGAAGGGCGCAGTGTGTGTGTCCTGTAGTGCTTAAGGTTGGATGCTTGGAGTGTCTTGAAGAGGAAAGGGAAGGTACAGCTAGGATGCATACCACCATCTCATAGCCCCAGCCATCTGGCTCCAGAGTGGCTGGCACAATGACAGCTGACCCAGAGACAGGGAGGTACAGCAGGAACTTGGAGGGTGAGAAGGCGGTGGCAGGTGTTTATCGCCACTTCACGTCTCATCATCCTCTGGCTTGTTTTGTGGGAGGTTCAGTCTGTTCCCCAGACACTCTTCTCACAGGTTGCTAATAAAATGACCGTTGGCCCCTTTCTCTTTGGAGTAGCTTCTTGAAGGGAGGCTTGTTGGCTAACCAGCCACATTGTTATGGGGATTGACAAATGTTTGGGGACACATGGGATCAAGTCCGCTTTTTTGCGTTCAGATTTGGCATGGGGGTGGGGGGCAGGTCACAAGTGTTGTATGTTAAGGCACCCGGCAAAAAGTAAAAAGCTTTGGGGCGTATTCCCTGCCCACCTTTATCCTTCAGAGAGTAGGGAAGATCGCAGCCTAGGTGGGATAAAGCGATAGGAGCCCTTCTGTACCAGATGAAAAAACGTATTATGCCCTGTTTTTCCTCTTCTAATATCTGGTGGTCTTCTATCTTACCTCTTTCTTTACTGGCTCAGGGCAGGGTTTGGGCCTAAAAGTAGCCGAGGTTACTAGGCCTGGGGCTCGGAAGGGGTGGGAACAGTGGGGCACAGGAGTAACCGGCTCTTCCGGAGCCAGCGGTGGGTGTGTGTGGGTGTGTGGTGATGAAGCGAAGGGGCGTGGTCACGGACGTCTGACTGGCGCAGGCTCCTCCTCTGCGTGCCCTGTCTCAAACTGGTTAGCCCCGGGTGGGAAGTAGGAAGAGTCATCTGCCCTGGAAAAAGGAGAGGACAGAAAGATACCAGCTTTCCTCTAAATCTGTCTCTTCCCTCTCCTGCCCTTAGGTGCCAGTTCCAACCTAAGCTTTTTTTTTTTTTCTTGGTGGTGGTGGGGTTACACATTTTTGTTTGTTTGTTTTTTGAGACAGGGTTTTTCTGTATAGTCCTGGCTGTCCTGGAACTCAGAAATCCACCTGCCTTCCCCTCCCAAGTGCTGGGATTTAAAGGCGTGCGCCACCACACCCGGCCACACTTTTTTTTTGGCCTAAGTTTACTTCTCCTTTCTCCAGGGCGTGGAGGTTAGTGGGCTTTTGGAAAGATAAGGTGTATCCCCCCAGGCGACCTTTGTCCTTTTGTGTTTTTTCCAGACAAAGTCTCACAATGAAGTCCTGACTAGTCTGGAACTGGATTTGTAGACCGAGCTGGCCTTGAGCTCACAGGGCGATCCTCTCCTCTATGCCTCTTCAGTGTAGGAATGAATTACAGGCGTAGGTTGCCGTGACTGACTTTATAAACTCATTTTGACAGGGGAGAGAGATTTTGTTCTGTCTCCTCCTTCCCTTAGTAATCTACTTAGCTCTGTTGAGGGAGAGGAACCATGTGCTGAGCCCACATTTTTGGCTTATCTTAAAGAGATCTTCCTTTTGAAACCTATCTGAACTTTTTATAATGATGGGTGGGTAAAGCATCTCCCACACTCAGAATCCCTGTCTGGGGTAAAGACATTGGCGTTAGACTGCGGGTTTGGTTCAATCAGACTCTGTCCACACCCAGATTTCCAAGCTCTTGGGATCCCCCAGAGAAAAATGTATTTGTTGACCCCTCAAAACCAGCCAGAATCTTGTTTCTGTGTGTCGCTCTTTCTAAGTCTTCAGACTTAGCTTTGCGTAGTTTAGGCAATTGTTTACATTCTAAAACTACATTTCATTGATTTGAATGGGAATTATGAAGCCAGAAGTCTTGAATTGGAAGGAAGGGGAATGCAGTTCCCTTCTAGTCATATTTTATTTACTGTGTGACTTTGAACAGGTCGGGGAGCTTCTGTGGGTCTTGAGTTCTTCACCTAGTGAGTGAGAGGTAGGAACTGAAAAGAAAAAGCTGTAACATACGACACTGTTTCCCATCTTGGGTCCCTGCAATAACATTCAGATGAAAGCTAAGCCATAATTCCTGTCTAGACTTCCAGTTCTCCAAAGAACACAGCCATGTAGCCTTGTTGGAAAAGGTTTGGGAGATGGGCGGTGGTGGCGCACACCTTTGATCCCAGTACTTGGGAGGCAGAGGCAGAGGCAGGCGGATTTCTGAGTTCGAGGCGAGTCTATCGAGTGAGTTCCAGGACAAGCCAGGGCTACACAGAGAAACCCTGTCTTGAAAAACCAAAAAAGAAAAAGAAAAGGTATGGGAACAGAAAAATATTTGGGTCAGTTTTTTGGTTATCTTACTGCTTATCTTCTACCCTTTGGCCACATTTAGGCTAGATTCAGATCTTGACTGTGTGGAGCCAGAGCCAAGTCTCCTTTCCCCATGTGCAG
Seq C2 exon
GATTCTCTCCAACGACCAAGGTCCTGCAGATGACACCAGGAAAGCAGTGATCCAGGCAGGACCAGGTTGTCCCTACAGGACATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040054:ENSMUST00000218772:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types