MmuEX1005067 @ mm10
Exon Skipping
Gene
ENSMUSG00000040054 | Baz2a
Description
bromodomain adjacent to zinc finger domain, 2A [Source:MGI Symbol;Acc:MGI:2151152]
Coordinates
chr10:128091577-128096523:+
Coord C1 exon
chr10:128091577-128091776
Coord A exon
chr10:128092460-128092850
Coord C2 exon
chr10:128096380-128096523
Length
391 bp
Sequences
Splice sites
3' ss Seq
TCCCTCTCCTGCTCTCCTAGGCC
3' ss Score
10.13
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
ACCCCAGTCTGTCATACAGGGACATCACCCTACAGCAGTTCAGGCTGTGTCGTTCGCAGGAAGCATACATTGGCTTTTTTGGGGTTTGCGAGTTCCCAGCCCATAGTTGGACAGGATCCAACAGTAGCCTTCAATTGAAGCAAGACCCAAGGACAGTGAGAATCTGGGTCCTAATCCTGAGTCCTGCCAGCCTGACATGG
Seq A exon
GCCTCCTTGAATCTTTGTGGCTCCCACTGTCTCTCCAGCCTCCTTTGTGAATAAGTCTTAGCTGGGCGCCCCGTGCCGGCAAAAAGAGCTCTTCAAGTACTCCAGTTCAGACCCACCGCTGTCCCCAACTACGCCGCAGAAGTTTCTGTCTTTTCCTGCATCTGGGATCCTTCCTGGTTCTGGCCCCTAGGAGACGCCACCCGCCGTCCCCTCCCCCAGCGGAGCCTTCGCGACAGCCGTCCCTGAGCGCTCGTCCTCACCCGGGTGGCTCCTGCCCCTTTAAGCGCCGCCCCCCCCCCCTCCGCCGCCGGCCTCGGGCTGGGGGAGGAGGCGCCGCCGCCCGGCTCGGCCACCTGCGCCGCCGCCGCCGCCCGGCCCGGCCCTGCTTCAG
Seq C2 exon
GCTAGATTCAGATCTTGACTGTGTGGAGCCAGAGCCAAGTCTCCTTTCCCCATGTGCAGGATTCTCTCCAACGACCAAGGTCCTGCAGATGACACCAGGAAAGCAGTGATCCAGGCAGGACCAGGTTGTCCCTACAGGACATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040054_MULTIEX1-1/3=C1-2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.500 A=0.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCCAGTCTGTCATACAGGG
R:
GACAACCTGGTCCTGCCTG
Band lengths:
330-721
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types