MmuINT1005366 @ mm10
Intron Retention
Gene
ENSMUSG00000040054 | Baz2a
Description
bromodomain adjacent to zinc finger domain, 2A [Source:MGI Symbol;Acc:MGI:2151152]
Coordinates
chr10:128091577-128092850:+
Coord C1 exon
chr10:128091577-128091776
Coord A exon
chr10:128091777-128092459
Coord C2 exon
chr10:128092460-128092850
Length
683 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
3' ss Seq
TCCCTCTCCTGCTCTCCTAGGCC
3' ss Score
10.13
Exon sequences
Seq C1 exon
ACCCCAGTCTGTCATACAGGGACATCACCCTACAGCAGTTCAGGCTGTGTCGTTCGCAGGAAGCATACATTGGCTTTTTTGGGGTTTGCGAGTTCCCAGCCCATAGTTGGACAGGATCCAACAGTAGCCTTCAATTGAAGCAAGACCCAAGGACAGTGAGAATCTGGGTCCTAATCCTGAGTCCTGCCAGCCTGACATGG
Seq A exon
GTAAGTATGATAGCTGCCCCTGGGAAAGGCCTGAGGGATGCCCAGCTCCCTCTCTGGCTGACTCAGCAGGGGTGGGGCCTAACCTTTGCTCTTTTGGGGGAGTGAAGGAAGAGAAACGGACTGTGGGGGGGACACGGGGCTTAGCTGGTGAGCTGCTGAGCATTGGCAAGCTCCAGCTCTAAGGAAGAGCCTGGGGTTGTATCTTAGGTTAGGGCTTCCTTCCTCACCCTAGAACCCCCCGCTCCAATTTAAGTGCAGAGATTCAAGTAGTATTTTACTGTATTCATTACTAGTTCAGTCTTGGTCTTGTAAGAGATGCTTCCCCTCCCCCTAGTTTCTCTCGGTGTTTCTTCCTCCCCCCTTTAACCCACCACCGGGTCGGGGCTGCACTGAGCAGCTGCTTCCTGTTGCCCCAGAGGTTGCTGCAAGGGTGGTGGTGGTGGCTGGGGCCAAACCGAGCAATGAATAAAGTCGATTCTTAGCCCTGCATCAGCCTCACGACCCTGTTACGGATGGCCTCCACCATTGACAGGACAGAGAGCGTTTTGCCTCTGTGGTTTCCTGATTCCAGATTTGTACAGCTGTAGTACGGATAGGGCCGGGAGAAGCCTGTTTACCTAGCAGGGCGCTGTGCGTGACCCCGACATGCTCTCGGCCTTGAGTTCCCTCTCCTGCTCTCCTAG
Seq C2 exon
GCCTCCTTGAATCTTTGTGGCTCCCACTGTCTCTCCAGCCTCCTTTGTGAATAAGTCTTAGCTGGGCGCCCCGTGCCGGCAAAAAGAGCTCTTCAAGTACTCCAGTTCAGACCCACCGCTGTCCCCAACTACGCCGCAGAAGTTTCTGTCTTTTCCTGCATCTGGGATCCTTCCTGGTTCTGGCCCCTAGGAGACGCCACCCGCCGTCCCCTCCCCCAGCGGAGCCTTCGCGACAGCCGTCCCTGAGCGCTCGTCCTCACCCGGGTGGCTCCTGCCCCTTTAAGCGCCGCCCCCCCCCCCTCCGCCGCCGGCCTCGGGCTGGGGGAGGAGGCGCCGCCGCCCGGCTCGGCCACCTGCGCCGCCGCCGCCGCCCGGCCCGGCCCTGCTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040054:ENSMUST00000218772:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.500 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCCAGTCTGTCATACAGGG
R:
AAACTTCTGCGGCGTAGTTGG
Band lengths:
345-1028
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types