MmuALTA0002880-2/3 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000029279 | Brdt
Description
bromodomain, testis-specific [Source:MGI Symbol;Acc:MGI:1891374]
Coordinates
chr5:107370155-107376362:+
Coord C1 exon
chr5:107370155-107370329
Coord A exon
chr5:107376250-107376264
Coord C2 exon
chr5:107376265-107376362
Length
15 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
TGTGTTATTCCTTTCTAAAGAGT
3' ss Score
5.31
Exon sequences
Seq C1 exon
CAGATACAATCTTCTGTGCAAGACATAACCTCTGCTGAAGCTCCCCTTGCTCAGCAGAGCACAGCACCATGCGGAGCCCCAGGGAAGCACTCCCAGCAGATGCTTGGTTGCCAAGTGACACAGCATCTGCAGGCCACAGAGAACACTGCATCTGTGCAGACTCAGCCTCTTTCAG
Seq A exon
AGTATGTGCTTCTAG
Seq C2 exon
GTGATTGCAAGCGAGTATTGCTTGGCCCCCCTGTGGTGCACACCTCTGCTGAGAGCCTCACAGTGCTGGAGCCAGAATGCCATGCTCCCGCGCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029279-24-23,24-22,24-21-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.818
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGTGCAGACTCAGCCTCTT
R:
CATTCTGGCTCCAGCACTGTG
Band lengths:
104-119
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types