RnoALTA0006116-2/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000002073 | Brdt
Description
bromodomain, testis-specific [Source:MGI Symbol;Acc:MGI:1891374]
Coordinates
chr14:3411702-3418720:-
Coord C1 exon
chr14:3418546-3418720
Coord A exon
chr14:3411800-3411814
Coord C2 exon
chr14:3411702-3411799
Length
15 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
3' ss Seq
TCTGTGTTATTCCTCTAAAGAGT
3' ss Score
5.62
Exon sequences
Seq C1 exon
CAGATACAGTGTTCTGTGCCCGACATAACCTCTGCTGAAACTGCCCTTGTTCAGCAGAGCACAGGGCCATGTGGAGCTCCAGGGAAGCCTCCCCAGCAGATGCCTGGTTGCCAAGTGCCACACCATCTTCAGGCCACAGAGAGCACTGCGTCTGTGCAGACTCAGCCCCTTGCAG
Seq A exon
AGTATGTGCTTCCAG
Seq C2 exon
GTGATTGCAAGCGAGTACTGCACGGGCCCCCTGTGGTGCACGCCTCTGCTGAGAGCCACACAGTGCTGGAGCTGCAATGCCATGCTCCTGTGCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002073-19-24,19-23-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.727
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCATCTTCAGGCCACAGAGA
R:
CTGTGTGGCTCTCAGCAGAGG
Band lengths:
117-132
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]