MmuALTA0003017-2/2 @ mm9
Alternative 3'ss
Gene
ENSMUSG00000074158 | C330019L16Rik
Description
RIKEN cDNA 9830147E19 gene [Source:MGI Symbol;Acc:MGI:3036263]
Coordinates
chr7:49894195-49897958:-
Coord C1 exon
chr7:49897850-49897958
Coord A exon
chr7:49894438-49894454
Coord C2 exon
chr7:49894195-49894437
Length
17 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
3' ss Seq
TAGTTGCTCACTTATTCCAGCCT
3' ss Score
2.49
Exon sequences
Seq C1 exon
CGGTTCCAAACTATATCTGAGGAGTGTGGTGTGGTTTGTGTGTCCTGCTCTGTGTGCTACTGCTGGGTGCTGTGAGGGGAATTCAGACGAGCTCAGACCTCGCGACATG
Seq A exon
CCTTCTATGTTTGAGAG
Seq C2 exon
AATCAGAGCTGCACTGAGGAGACTGTAAGACTTCCCTGCATGAAACTGTGAGGTTGAAGCCTGAGTTGCATTTTGAGACCAAAAGATGCTGATCCATCTGAGTGATGGGACATCTGCGTGGACAGCTGTGTGTAGGGAGTGGAAGTAACCAAAAAGGAAGATTTATGAGAAGTTGAAGGAGTAGGCCATCTAAGTCCTTCGAACCTGAAGCTGCATGAGTCTGAGACACAACTACAGGATTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000074158-0-1,0-0-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGTGAGGGGAATTCAGACG
R:
GCAACTCAGGCTTCAACCTCA
Band lengths:
110-127
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: