MmuEX0008568 @ mm9
Exon Skipping
Gene
ENSMUSG00000074158 | C330019L16Rik
Description
RIKEN cDNA 9830147E19 gene [Source:MGI Symbol;Acc:MGI:3036263]
Coordinates
chr7:49871343-49897958:-
Coord C1 exon
chr7:49897823-49897958
Coord A exon
chr7:49871603-49871729
Coord C2 exon
chr7:49871343-49871403
Length
127 bp
Sequences
Splice sites
3' ss Seq
AAATATGTATGGGATTTTAGGAT
3' ss Score
4.7
5' ss Seq
TAGGTAAAC
5' ss Score
5.88
Exon sequences
Seq C1 exon
CGGTTCCAAACTATATCTGAGGAGTGTGGTGTGGTTTGTGTGTCCTGCTCTGTGTGCTACTGCTGGGTGCTGTGAGGGGAATTCAGACGAGCTCAGACCTCGCGACATGGTGAGTATATGGCAGCTGCTTCCAATG
Seq A exon
GATGCATTGACCTTTGATGATGTGCATATACACTTCACTCGGGAGGAGTGGTCCTTGCTGGATCCATCTCAGAAGAGACTTTACCAAGATGTCATGCTGGAGAACTACAGGAATCTCACCACTATAG
Seq C2 exon
GGTACAATTGGAAAGATCATAACATTGAAGAACATTCTCAAAATGATAGAAGATATGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000074158_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.571
Domain overlap (PFAM):
C1:
NA
A:
PF0135222=KRAB=WD(100=95.3)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGTTCCAAACTATATCTGAGGAGTG
R:
TGTTCTTCAATGTTATGATCTTTCCA
Band lengths:
170-297
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: