MmuALTA0003025-2/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000073418 | C4b
Description
complement component 4B (Chido blood group) [Source:MGI Symbol;Acc:MGI:88228]
Coordinates
chr17:34730820-34731169:-
Coord C1 exon
chr17:34731076-34731169
Coord A exon
chr17:34730975-34730989
Coord C2 exon
chr17:34730820-34730974
Length
15 bp
Sequences
Splice sites
5' ss Seq
CATGTAAGC
5' ss Score
5.61
3' ss Seq
CTCACCACTGTACTACACAGGGG
3' ss Score
5.04
Exon sequences
Seq C1 exon
ATCCTTCGTACCTACAATGTCCTGGACATGAAGAACACCACATGCCAGGACCTTCAGATAGAAGTGAAGGTCACAGGCGCTGTGGAATACGCAT
Seq A exon
GGGATGCCAATGAAG
Seq C2 exon
ACTACGAAGACTACTATGACATGCCAGCCGCAGATGACCCCAGCGTCCCCTTGCAGCCTGTCACGCCCCTGCAGCTTTTTGAGGGTCGTAGGAGCCGCCGCAGGAGGGAGGCCCCCAAGGTGGTCGAAGAGCAGGAGTCCAGAGTTCAGTACACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000073418-51-55,51-54-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.213
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGGACATGAAGAACACCACA
R:
GCGGCTGGCATGTCATAGTAG
Band lengths:
105-120
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types