MmuALTA0003025-2/2 @ mm9
Alternative 3'ss
Gene
ENSMUSG00000073418 | C4b
Description
complement component 4B (Chido blood group) [Source:MGI Symbol;Acc:MGI:88228]
Coordinates
chr17:34867754-34868114:-
Coord C1 exon
chr17:34868021-34868114
Coord A exon
chr17:34867920-34867934
Coord C2 exon
chr17:34867754-34867919
Length
15 bp
Sequences
Splice sites
5' ss Seq
CATGTAAGC
5' ss Score
5.61
3' ss Seq
CTCACCACTGTACTACACAGGGG
3' ss Score
5.04
Exon sequences
Seq C1 exon
ATCCTTCGTACCTACAATGTCCTGGACATGAAGAACACCACATGCCAGGACCTTCAGATAGAAGTGAAGGTCACAGGCGCTGTGGAATACGCAT
Seq A exon
GGGATGCCAATGAAG
Seq C2 exon
ACTACGAAGACTACTATGACATGCCAGCCGCAGATGACCCCAGCGTCCCCTTGCAGCCTGTCACGCCCCTGCAGCTTTTTGAGGGTCGTAGGAGCCGCCGCAGGAGGGAGGCCCCCAAGGTGGTCGAAGAGCAGGAGTCCAGAGTTCAGTACACTGTGTGTATCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000073418-33-33,33-32-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.213
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGGACATGAAGAACACCACA
R:
GCGGCTGGCATGTCATAGTAG
Band lengths:
105-120
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: