MmuALTA0003039-1/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000038330 | C87499
Description
expressed sequence C87499 [Source:MGI Symbol;Acc:MGI:2140706]
Coordinates
chr4:88629202-88630139:-
Coord C1 exon
chr4:88629829-88630139
Coord A exon
NA
Coord C2 exon
chr4:88629202-88629355
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGC
5' ss Score
9.88
3' ss Seq
TCTACAAATTTCTCCCACAGTAG
3' ss Score
6.68
Exon sequences
Seq C1 exon
CATGACTCTTTAGAAGAGGAAACAATGAATGCCTACTCCCCACCCACCCTCCTGCAGCTGGCAAGGCAGAAGCTACTGAGGGAGGAGGCCTTGGCCATTTCTGCTCTCAAGGACCTACCCAGAGAGCTGCTACCAGAGATGTTTGAGGAGGCCTTCACTGATGAATGTACAAAGACCTTAAGGGCCATGATACCTATGTGGCCCTTCCCATGCCTTCCTGTAGGAACGCTGATAAAGAACCCCAACCTGGAGACTTTGAAGGCTGTGCTTGAGGGACTAGATATACTGCTTGCACCAAAGGTTCGCTCCAG
Seq A exon
NA
Seq C2 exon
TAGGTGCAAACTCAGAGTACTCAATTTGAGGAATGAGCACCATGAGTTTTGGAGGATATGGGCTGGATCCCATGAAGATGAATGCTTACCACAGTTGACACAGAAGCAGCCAGTGGAGAATAGTCCTGACTGTGGAGTGAAGAAACATTTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038330-3-3,3-2-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.061 A=NA C2=0.056
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCATGATACCTATGTGGCCC
R:
CACTGGCTGCTTCTGTGTCAA
Band lengths:
243-360
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types