MmuEX0008646 @ mm10
Exon Skipping
Gene
ENSMUSG00000038330 | C87499
Description
expressed sequence C87499 [Source:MGI Symbol;Acc:MGI:2140706]
Coordinates
chr4:88629202-88634211:-
Coord C1 exon
chr4:88634116-88634211
Coord A exon
chr4:88629829-88630139
Coord C2 exon
chr4:88629202-88629355
Length
311 bp
Sequences
Splice sites
3' ss Seq
TTTTTCCCCTGCTTCCCTAGCAT
3' ss Score
8.81
5' ss Seq
CAGGTAGGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
TGAGTCACAGCAGGCAGAGAAACACTAGGTATCTTGGAGCCTGGAGTCACAGCCTTCCCTTGTCTGAATATGATCTGTCACCAGTGTCCCGATCAG
Seq A exon
CATGACTCTTTAGAAGAGGAAACAATGAATGCCTACTCCCCACCCACCCTCCTGCAGCTGGCAAGGCAGAAGCTACTGAGGGAGGAGGCCTTGGCCATTTCTGCTCTCAAGGACCTACCCAGAGAGCTGCTACCAGAGATGTTTGAGGAGGCCTTCACTGATGAATGTACAAAGACCTTAAGGGCCATGATACCTATGTGGCCCTTCCCATGCCTTCCTGTAGGAACGCTGATAAAGAACCCCAACCTGGAGACTTTGAAGGCTGTGCTTGAGGGACTAGATATACTGCTTGCACCAAAGGTTCGCTCCAG
Seq C2 exon
TAGGTGCAAACTCAGAGTACTCAATTTGAGGAATGAGCACCATGAGTTTTGGAGGATATGGGCTGGATCCCATGAAGATGAATGCTTACCACAGTTGACACAGAAGCAGCCAGTGGAGAATAGTCCTGACTGTGGAGTGAAGAAACATTTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038330-'0-3,'0-1,3-3
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.061 C2=0.072
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCACAGCAGGCAGAGAAACA
R:
TGCAAATGTTTCTTCACTCCACA
Band lengths:
246-557
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types