MmuEX0008646 @ mm9
Exon Skipping
Gene
ENSMUSG00000038330 | C87499
Description
expressed sequence C87499 [Source:MGI Symbol;Acc:MGI:2140706]
Coordinates
chr4:88274684-88280163:-
Coord C1 exon
chr4:88280020-88280163
Coord A exon
chr4:88275733-88276043
Coord C2 exon
chr4:88274684-88275259
Length
311 bp
Sequences
Splice sites
3' ss Seq
TTTTTCCCCTGCTTCCCTAGCAT
3' ss Score
8.81
5' ss Seq
CAGGTAGGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
CTGGGAGGGTGTGGCTACAAAGGAAGGGTTCAGCTGAAAGGTATATAATGAGTCACAGCAGGCAGAGAAACACTAGGTATCTTGGAGCCTGGAGTCACAGCCTTCCCTTGTCTGAATATGATCTGTCACCAGTGTCCCGATCAG
Seq A exon
CATGACTCTTTAGAAGAGGAAACAATGAATGCCTACTCCCCACCCACCCTCCTGCAGCTGGCAAGGCAGAAGCTACTGAGGGAGGAGGCCTTGGCCATTTCTGCTCTCAAGGACCTACCCAGAGAGCTGCTACCAGAGATGTTTGAGGAGGCCTTCACTGATGAATGTACAAAGACCTTAAGGGCCATGATACCTATGTGGCCCTTCCCATGCCTTCCTGTAGGAACGCTGATAAAGAACCCCAACCTGGAGACTTTGAAGGCTGTGCTTGAGGGACTAGATATACTGCTTGCACCAAAGGTTCGCTCCAG
Seq C2 exon
TAGGTGCAAACTCAGAGTACTCAATTTGAGGAATGAGCACCATGAGTTTTGGAGGATATGGGCTGGATCCCATGAAGATGAATGCTTACCACAGTTGACACAGAAGCAGCCAGTGGAGAATAGTCCTGACTGTGGAGTGAAGAAACATTTGCAGGTGACAACTGACTTCGAACTCATGAAGGGCAGACTTGATGAATCTGCTACATACTTGTTGCAGTGGGCTGAGCAGAGAAAAGATTCCATTCATTTATGCTGTAGAAAGCTGCAGATTCAGGGCTTATCCAAAGACGCATTCATAGAAATCTTCAAAATTATAGATGCAAACTGTGTGCAGGAGCTGGAGCTAAGTTGTATCTGGGAAGAAGAGTTGCCTTTTCTTAATCCCTACCTGAGACAGATGAAAAATCTTCTCACTCTCAAGCTAGATGACATCACAGAAGTTACTATGGATGGTGATGATTTGTTTGACGAGAAGAAAAGGCGCAAGTTGATTTCTCAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038330_MULTIEX1-1/2=C1-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.061 C2=0.027
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCTTGGAGCCTGGAGTCACA
R:
GCCCTGAATCTGCAGCTTTCT
Band lengths:
343-654
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: