MmuALTA0003580-1/2 @ mm9
Alternative 3'ss
Gene
ENSMUSG00000008845 | Cd163
Description
CD163 antigen [Source:MGI Symbol;Acc:MGI:2135946]
Coordinates
chr6:124277916-124279115:+
Coord C1 exon
chr6:124277916-124278005
Coord A exon
NA
Coord C2 exon
chr6:124279063-124279115
Length
0 bp
Sequences
Splice sites
5' ss Seq
CGGGTCAGT
5' ss Score
6.55
3' ss Seq
CTATTTCTGGAATTAAAAAGGGG
3' ss Score
1.05
Exon sequences
Seq C1 exon
TTTCCTCAAGAGGAGAGGTCTTGATACATCAAGTTCAGTACCAAGAGATGGATTCAAAGGCGGATGATCTGGACTTGCTGAAATCCTCGG
Seq A exon
NA
Seq C2 exon
GGGTCATTCAGAGGCACACTGAGAAGGAAAATGATAATTTATAATCCACTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000008845-14-15,14-14-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence exclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.032 A=NA C2=0.117
Domain overlap (PFAM):
C1:
PF063657=CD34_antigen=FE(31.2=100)
A:
NA
C2:
PF063657=CD34_antigen=PD(10.4=66.7)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGAGGAGAGGTCTTGATACATCA
R:
TATCATTTTCCTTCTCAGTGTGCCT
Band lengths:
119-202
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: