HsaALTA0001650-2/3 @ hg38
Alternative 3'ss
Gene
ENSG00000177575 | CD163
Description
CD163 molecule [Source:HGNC Symbol;Acc:HGNC:1631]
Coordinates
chr12:7479860-7481256:-
Coord C1 exon
chr12:7481161-7481256
Coord A exon
chr12:7479911-7479913
Coord C2 exon
chr12:7479860-7479910
Length
3 bp
Sequences
Splice sites
5' ss Seq
CAGGTCTGT
5' ss Score
6.84
3' ss Seq
CTATTTCTGGAATGGAAAAGGAG
3' ss Score
-2.2
Exon sequences
Seq C1 exon
TTTCCTCAAGAGGAGAGAACTTAGTCCACCAAATTCAATACCGGGAGATGAATTCTTGCCTGAATGCAGATGATCTGGACCTAATGAATTCCTCAG
Seq A exon
GAG
Seq C2 exon
GCCATTCTGAGCCACACTGAAAAGGAAAATGGGAATTTATAACCCAGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000177575-26-36,26-35,26-34-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.076 A=NA C2=0.268
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTCCACCAAATTCAATACCGGG
R:
TTCAGTGTGGCTCAGAATGGC
Band lengths:
95-98
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains