HsaALTA0001650-3/3 @ hg38
Alternative 3'ss
Gene
ENSG00000177575 | CD163
Description
CD163 molecule [Source:HGNC Symbol;Acc:HGNC:1631]
Coordinates
chr12:7479860-7481256:-
Coord C1 exon
chr12:7481161-7481256
Coord A exon
chr12:7479911-7479996
Coord C2 exon
chr12:7479860-7479910
Length
86 bp
Sequences
Splice sites
5' ss Seq
CAGGTCTGT
5' ss Score
6.84
3' ss Seq
AATTATTTTCTTCCTTTCAGAAA
3' ss Score
10.55
Exon sequences
Seq C1 exon
TTTCCTCAAGAGGAGAGAACTTAGTCCACCAAATTCAATACCGGGAGATGAATTCTTGCCTGAATGCAGATGATCTGGACCTAATGAATTCCTCAG
Seq A exon
AAAATTCCCATGAGTCAGCTGATTTCAGTGCTGCTGAACTAATTTCTGTGTCTAAATTTCTTCCTATTTCTGGAATGGAAAAGGAG
Seq C2 exon
GCCATTCTGAGCCACACTGAAAAGGAAAATGGGAATTTATAACCCAGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000177575-26-36,26-35,26-34-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.076 A=NA C2=0.268
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGGAGAGAACTTAGTCCACCA
R:
ACTGGGTTATAAATTCCCATTTTCCT
Band lengths:
136-222
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains