MmuALTA0003580-2/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000008845 | Cd163
Description
CD163 antigen [Source:MGI Symbol;Acc:MGI:2135946]
Coordinates
chr6:124327898-124329097:+
Coord C1 exon
chr6:124327898-124327987
Coord A exon
chr6:124328962-124329044
Coord C2 exon
chr6:124329045-124329097
Length
83 bp
Sequences
Splice sites
5' ss Seq
CGGGTCAGT
5' ss Score
6.55
3' ss Seq
AATTACCTTCTTCCTTCCAGAAA
3' ss Score
8.94
Exon sequences
Seq C1 exon
TTTCCTCAAGAGGAGAGGTCTTGATACATCAAGTTCAGTACCAAGAGATGGATTCAAAGGCGGATGATCTGGACTTGCTGAAATCCTCGG
Seq A exon
AAAATTCCAACAATTCATATGATTTTAATGATGATGGACTGACATCTTTGTCTAAATATCTTCCTATTTCTGGAATTAAAAAG
Seq C2 exon
GGGTCATTCAGAGGCACACTGAGAAGGAAAATGATAATTTATAATCCACTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000008845-17-19,17-18-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.043 A=NA C2=0.066
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGAGGAGAGGTCTTGATACATCA
R:
TATCATTTTCCTTCTCAGTGTGCCT
Band lengths:
119-202
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types