MmuALTA0003645-2/2 @ mm9
Alternative 3'ss
Gene
ENSMUSG00000032477 | Cdc25a
Description
cell division cycle 25 homolog A (S. pombe) [Source:MGI Symbol;Acc:MGI:103198]
Coordinates
chr9:109781735-109782439:+
Coord C1 exon
chr9:109781735-109781771
Coord A exon
chr9:109782338-109782340
Coord C2 exon
chr9:109782341-109782439
Length
3 bp
Sequences
Splice sites
5' ss Seq
CCTGTAAGT
5' ss Score
7.52
3' ss Seq
TCTCTGTTTTACTTTGATAGCAG
3' ss Score
5.87
Exon sequences
Seq C1 exon
CCTTGAAATTTCCCTGACGAGAATAAATTCCCTACCT
Seq A exon
CAG
Seq C2 exon
AAGCTCCTGGGATGTAGCCCAGCCCTGAAGAGGAGCCACTCTGATTCTCTAGACCACGACACCTTTCACCTCATCGACCAGGATGAAAATAAAGAAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032477-6-8,6-7-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.385 A=NA C2=0.515
Domain overlap (PFAM):
C1:
PF066178=M-inducer_phosp=FE(5.1=100)
A:
NA
C2:
PF066178=M-inducer_phosp=FE(14.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTGAAATTTCCCTGACGAGA
R:
AGGTGAAAGGTGTCGTGGTCT
Band lengths:
108-111
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: