BtaALTA0006388-2/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000009586 | CDC25A
Description
Bos taurus cell division cycle 25 homolog A (S. pombe) (CDC25A), mRNA. [Source:RefSeq mRNA;Acc:NM_001101100]
Coordinates
chr22:52246785-52247362:+
Coord C1 exon
chr22:52246785-52246821
Coord A exon
chr22:52247261-52247263
Coord C2 exon
chr22:52247264-52247362
Length
3 bp
Sequences
Splice sites
5' ss Seq
CCTGTAAGT
5' ss Score
7.52
3' ss Seq
TCCTTTTTTCACTTTGACAGCAG
3' ss Score
7.41
Exon sequences
Seq C1 exon
CCTTGAAAATCCCATGAGGAGAATAAATTCCCTACCT
Seq A exon
CAG
Seq C2 exon
AAGCTCTTGGGGTGTAGCCCAGCTCTGAAGAGGAGCCATTCTGATTCTCTTGACCATGATGTCTTTCAGCTGATTGACCAGGATGAGAACAAGGAAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000009586-4-4,4-3-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.588
Domain overlap (PFAM):
C1:
PF066178=M-inducer_phosp=FE(4.9=100)
A:
NA
C2:
PF066178=M-inducer_phosp=FE(13.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCCATGAGGAGAATAAATTCCCT
R:
TCAGCTGAAAGACATCATGGTCA
Band lengths:
101-104
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development