BtaEX0008040 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000009586 | CDC25A
Description
Bos taurus cell division cycle 25 homolog A (S. pombe) (CDC25A), mRNA. [Source:RefSeq mRNA;Acc:NM_001101100]
Coordinates
chr22:52242566-52249994:+
Coord C1 exon
chr22:52242566-52242788
Coord A exon
chr22:52246785-52246821
Coord C2 exon
chr22:52249875-52249994
Length
37 bp
Sequences
Splice sites
3' ss Seq
ACTTTCTGATTTCATTGCAGCCT
3' ss Score
8.72
5' ss Seq
CCTGTAAGT
5' ss Score
7.52
Exon sequences
Seq C1 exon
GCGGCGGAGGCGGAGGAAGAGGGAGCGGGATCCCTAGGAGGCCCGGCGCCGCCATGGAACTGGGCCCGGAGCCCCCGCACCGCCGCCGCCTGCTCTTCGCCTGCAGCCCCCCGCCCGCACCGCAGCCCGTCGTGAAGGCGCTGTTTGGCACGCCAGCCGCCGGGGGCCTGTCGCCTGTCACCAACCTGACGGTCACCATGGACCAGCTGCAGGGACTGGGCAG
Seq A exon
CCTTGAAAATCCCATGAGGAGAATAAATTCCCTACCT
Seq C2 exon
CAAGTCTTTGAGTTTAAGAAGCCAATAAGACCTGCATCTCGAGGCTGCCTACATGTTCACGGACTGGAGGAGGGTAAAGATGTCTTCACACAGAGGCAGAACTCCGCCCCAGCTCGGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000009586_MULTIEX1-3/11=C1-5
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.772 A=1.000 C2=0.625
Domain overlap (PFAM):
C1:
NO
A:
PF066178=M-inducer_phosp=FE(4.9=100)
C2:
PF066178=M-inducer_phosp=FE(15.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCACCAACCTGACGGTCAC
R:
CCAGTCCGTGAACATGTAGGC
Band lengths:
114-151
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development