HsaEX6055703 @ hg19
Exon Skipping
Gene
ENSG00000164045 | CDC25A
Description
cell division cycle 25 homolog A (S. pombe) [Source:HGNC Symbol;Acc:1725]
Coordinates
chr3:48224419-48226185:-
Coord C1 exon
chr3:48226143-48226185
Coord A exon
chr3:48225290-48225326
Coord C2 exon
chr3:48224419-48224520
Length
37 bp
Sequences
Splice sites
3' ss Seq
ACCTTCTGATCTCATTACAGCCT
3' ss Score
8.19
5' ss Seq
CCTGTAAGT
5' ss Score
7.52
Exon sequences
Seq C1 exon
GTTTCTGTCTAGATTCTCCTGGGCCATTGGACAGTAAAGAAAA
Seq A exon
CCTTGAAAATCCTATGAGAAGAATACATTCCCTACCT
Seq C2 exon
CAGAAGCTGTTGGGATGTAGTCCAGCTCTGAAGAGGAGCCATTCTGATTCTCTTGACCATGACATCTTTCAGCTCATCGACCCAGATGAGAACAAGGAAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000164045-'3-6,'3-5,4-6=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.885 C2=0.537
Domain overlap (PFAM):
C1:
PF066178=M-inducer_phosp=PU(18.3=73.3)
A:
PF066178=M-inducer_phosp=FE(20.0=100)
C2:
PF066178=M-inducer_phosp=FE(55.0=100),PF066178=M-inducer_phosp=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATTCTCCTGGGCCATTGGA
R:
TCATCTGGGTCGATGAGCTGA
Band lengths:
122-159
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)