GgaEX7001582 @ galGal4
Exon Skipping
Gene
ENSGALG00000004934 | CDC25A
Description
M-phase inducer phosphatase 1 [Source:RefSeq peptide;Acc:NP_001186501]
Coordinates
chr2:570599-571275:+
Coord C1 exon
chr2:570599-570634
Coord A exon
chr2:570776-570812
Coord C2 exon
chr2:571174-571275
Length
37 bp
Sequences
Splice sites
3' ss Seq
TGTGTTCTTTCTCATTGTAGCCT
3' ss Score
10.17
5' ss Seq
CCGGTAAGT
5' ss Score
10.91
Exon sequences
Seq C1 exon
ATTTGAGAAGGCAATTCTTGCATCGAGCAGACTGAA
Seq A exon
CCTCCGACTGCCTCTCAGAAGAATACATTCACTGCCG
Seq C2 exon
CAAAGGCTCCTGGGCTCCAGTCCTGCTCTGAAGAGAAGCCATTCGGATTCCACGGATTGTAATGCTTTTCAGCTCCTAGAACAGAATGAAAATAAGGAGAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004934-'9-11,'9-10,10-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.231 A=0.077 C2=0.912
Domain overlap (PFAM):
C1:
PF066178=M-inducer_phosp=FE(4.9=100)
A:
PF066178=M-inducer_phosp=FE(4.9=100)
C2:
PF066178=M-inducer_phosp=FE(13.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]