RnoEX0018898 @ rn6
Exon Skipping
Gene
ENSRNOG00000020737 | Cdc25a
Description
cell division cycle 25A [Source:RGD Symbol;Acc:621498]
Coordinates
chr8:117955911-117957589:+
Coord C1 exon
chr8:117955911-117955953
Coord A exon
chr8:117956855-117956891
Coord C2 exon
chr8:117957488-117957589
Length
37 bp
Sequences
Splice sites
3' ss Seq
ACCTTTTGATCTCATTACAGCCT
3' ss Score
7.55
5' ss Seq
CCTGTAAGT
5' ss Score
7.52
Exon sequences
Seq C1 exon
GTTTCTGTCTAGATTCTCCTGGGCCCTTGGACAGTAAAGAAAA
Seq A exon
CCTTGAAATTTCCCTGAGGAGAATAAATTGCCTACCT
Seq C2 exon
CAGAAGCTCTTGGGGTGTAGCCCAGCGCTAAAGAGGAGCCATTCTGATTCTCTAGACCACGACATCTTTCAACTCATTGACCAGGATGAAAATAAAGAAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020737-'4-5,'4-4,5-5
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.667 A=0.077 C2=0.294
Domain overlap (PFAM):
C1:
PF066178=M-inducer_phosp=PU(4.5=73.3)
A:
PF066178=M-inducer_phosp=FE(4.9=100)
C2:
PF066178=M-inducer_phosp=FE(13.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCTAGATTCTCCTGGGCCC
R:
TGAGTTGAAAGATGTCGTGGTCT
Band lengths:
114-151
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]