MmuEX0010347 @ mm9
Exon Skipping
Gene
ENSMUSG00000032477 | Cdc25a
Description
cell division cycle 25 homolog A (S. pombe) [Source:MGI Symbol;Acc:MGI:103198]
Coordinates
chr9:109780772-109782439:+
Coord C1 exon
chr9:109780772-109780814
Coord A exon
chr9:109781735-109781771
Coord C2 exon
chr9:109782338-109782439
Length
37 bp
Sequences
Splice sites
3' ss Seq
CCTTTTTGATCTCATTACAGCCT
3' ss Score
7.33
5' ss Seq
CCTGTAAGT
5' ss Score
7.52
Exon sequences
Seq C1 exon
GTTTCTGTCTAGATTCTCCTGGGCCCTTGGACAGTAAAGAAAA
Seq A exon
CCTTGAAATTTCCCTGACGAGAATAAATTCCCTACCT
Seq C2 exon
CAGAAGCTCCTGGGATGTAGCCCAGCCCTGAAGAGGAGCCACTCTGATTCTCTAGACCACGACACCTTTCACCTCATCGACCAGGATGAAAATAAAGAAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032477-'5-7,'5-6,6-7
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.700 A=0.385 C2=0.515
Domain overlap (PFAM):
C1:
PF066178=M-inducer_phosp=PU(4.7=73.3)
A:
PF066178=M-inducer_phosp=FE(5.1=100)
C2:
PF066178=M-inducer_phosp=FE(14.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCTAGATTCTCCTGGGCCC
R:
GAGGTGAAAGGTGTCGTGGTC
Band lengths:
113-150
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: