BtaEX0008041 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000009586 | CDC25A
Description
Bos taurus cell division cycle 25 homolog A (S. pombe) (CDC25A), mRNA. [Source:RefSeq mRNA;Acc:NM_001101100]
Coordinates
chr22:52242566-52249994:+
Coord C1 exon
chr22:52242566-52242788
Coord A exon
chr22:52247261-52247362
Coord C2 exon
chr22:52249875-52249994
Length
102 bp
Sequences
Splice sites
3' ss Seq
TCCTTTTTTCACTTTGACAGCAG
3' ss Score
7.41
5' ss Seq
AATGTGAGT
5' ss Score
7.8
Exon sequences
Seq C1 exon
GCGGCGGAGGCGGAGGAAGAGGGAGCGGGATCCCTAGGAGGCCCGGCGCCGCCATGGAACTGGGCCCGGAGCCCCCGCACCGCCGCCGCCTGCTCTTCGCCTGCAGCCCCCCGCCCGCACCGCAGCCCGTCGTGAAGGCGCTGTTTGGCACGCCAGCCGCCGGGGGCCTGTCGCCTGTCACCAACCTGACGGTCACCATGGACCAGCTGCAGGGACTGGGCAG
Seq A exon
CAGAAGCTCTTGGGGTGTAGCCCAGCTCTGAAGAGGAGCCATTCTGATTCTCTTGACCATGATGTCTTTCAGCTGATTGACCAGGATGAGAACAAGGAAAAT
Seq C2 exon
CAAGTCTTTGAGTTTAAGAAGCCAATAAGACCTGCATCTCGAGGCTGCCTACATGTTCACGGACTGGAGGAGGGTAAAGATGTCTTCACACAGAGGCAGAACTCCGCCCCAGCTCGGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000009586_MULTIEX1-4/11=C1-5
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.772 A=0.588 C2=0.625
Domain overlap (PFAM):
C1:
NO
A:
PF066178=M-inducer_phosp=FE(13.4=100)
C2:
PF066178=M-inducer_phosp=FE(15.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGAAGAGGGAGCGGGATC
R:
AGCCTCGAGATGCAGGTCTTA
Band lengths:
257-359
Functional annotations
There are 1 annotated functions for this event
PMID: 12411508
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: alanine scanning, detection by mass spectrometry, inhibitor, protein kinase assay. ELM ID: ELMI003208; ELM sequence: LGCSPALK; Overlap: FULL
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development