MmuALTA0003650-1/5 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000044201 | Cdc25c
Description
cell division cycle 25C [Source:MGI Symbol;Acc:MGI:88350]
Coordinates
chr18:34744871-34747313:-
Coord C1 exon
chr18:34747224-34747313
Coord A exon
NA
Coord C2 exon
chr18:34744871-34744969
Length
0 bp
Sequences
Splice sites
5' ss Seq
AATGTGAGT
5' ss Score
7.8
3' ss Seq
CGCGGGTCCTTCTTGTGCAGATA
3' ss Score
8.94
Exon sequences
Seq C1 exon
GTACAGCTTCTTTGTAGTACTCCGAATGCTATGAATCATGGCCACAGAAAGAAGATTGCAAAGCGTAGCACATCTGCACATAAAGAAAAT
Seq A exon
NA
Seq C2 exon
ATAAACACCAGTTTAAAGGCATTGGAATGGGAGGCACCTAGGACCCCAAGGTTTCGAAAAATGCCTGGAGGTCCTCTGACTTCTCCTCTGTGTGAGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000044201-8-15,8-14,8-13,8-12,8-11-1/5
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.767 A=NA C2=0.909
Domain overlap (PFAM):
C1:
PF066178=M-inducer_phosp=FE(17.9=100)
A:
NA
C2:
PF066178=M-inducer_phosp=FE(19.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCCACAGAAAGAAGATTGCA
R:
AGGACCTCCAGGCATTTTTCG
Band lengths:
127-155
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types