MmuALTA0003673-1/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000021279 | Cdc42bpb
Description
CDC42 binding protein kinase beta [Source:MGI Symbol;Acc:MGI:2136459]
Coordinates
chr12:111339821-111342109:-
Coord C1 exon
chr12:111342026-111342109
Coord A exon
NA
Coord C2 exon
chr12:111339821-111339912
Length
0 bp
Sequences
Splice sites
5' ss Seq
GAGGTATGT
5' ss Score
9.81
3' ss Seq
CTCTCGTTCCTCACAGACAGCTT
3' ss Score
2.99
Exon sequences
Seq C1 exon
GTTGCTGTTGTCAAAATGAAGAACACTGAACGAATTTATGCAATGAAAATTCTCAACAAATGGGAAATGCTAAAGAGAGCAGAG
Seq A exon
NA
Seq C2 exon
CTTGCTTTCGAGAAGAGCGTGACGTGCTGGTGAACGGCGACTGCCAGTGGATCACGGCTCTGCACTATGCCTTTCAGGATGAGAACTACCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021279-11-4,11-3-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence exclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(10.1=100)
A:
NA
C2:
PF0006920=Pkinase=FE(11.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTGTTGTCAAAATGAAGAACACT
R:
GTCACGCTCTTCTCGAAAGCA
Band lengths:
105-109
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types