Special

MmuALTA0003673-1/2 @ mm9

Alternative 3'ss

Gene
ENSMUSG00000021279 | Cdc42bpb
Description
CDC42 binding protein kinase beta [Source:MGI Symbol;Acc:MGI:2136459]
Coordinates
chr12:112578032-112580320:-
Coord C1 exon
chr12:112580237-112580320
Coord A exon
NA
Coord C2 exon
chr12:112578032-112578123
Length
0 bp
Sequences
Splice sites
5' ss Seq
GAGGTATGT
5' ss Score
9.81
3' ss Seq
CTCTCGTTCCTCACAGACAGCTT
3' ss Score
2.99
Exon sequences
Seq C1 exon
GTTGCTGTTGTCAAAATGAAGAACACTGAACGAATTTATGCAATGAAAATTCTCAACAAATGGGAAATGCTAAAGAGAGCAGAG
Seq A exon
NA
Seq C2 exon
CTTGCTTTCGAGAAGAGCGTGACGTGCTGGTGAACGGCGACTGCCAGTGGATCACGGCTCTGCACTATGCCTTTCAGGATGAGAACTACCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021279-2-3,2-2-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact





	

	
ORF disruption when splice site is used (sequence exclusion)





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.000 A=NA C2=0.000
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
PF0006920=Pkinase=FE(10.1=100)

							
A:
NA

							
C2:
PF0006920=Pkinase=FE(11.6=100)

						

					

				








    
Main Inclusion Isoform:
NA





     
                   









    
Main Skipping Isoform:
ENSMUSP00000042565f957A





     
      









    
Other Inclusion Isoforms:
NA
          









    
Other Skipping Isoforms:
ENSMUSP00000042565, ENSMUSP00000042565f955A, ENSMUSP00000042565f956A
  



Associated events






Other assemblies


mm10




Conservation


Human
(hg38)
No conservation detected
Human
(hg19)
chr14:103470357-103470358 
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
chr21:69325404-69325405 
Chicken
(galGal4)
chr5:49859897-49859898 
LOW PSI
GgaALTA1007785-1/2
(CDC42BPB)
Chicken
(galGal3)
chr5:52464516-52464517 
Zebrafish
(danRer10)
chr17:8209796-8209797 
LOW PSI
DreALTA0007267-1/2
(cdc42bpaa)
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
TGCTGTTGTCAAAATGAAGAACACT

				
R: 
GTCACGCTCTTCTCGAAAGCA

				
Band lengths: 
105-109

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






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