MmuALTA0003674-3/3 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000021279 | Cdc42bpb
Description
CDC42 binding protein kinase beta [Source:MGI Symbol;Acc:MGI:2136459]
Coordinates
chr12:111309463-111311566:-
Coord C1 exon
chr12:111311487-111311566
Coord A exon
chr12:111309477-111309566
Coord C2 exon
chr12:111309463-111309476
Length
90 bp
Sequences
Splice sites
5' ss Seq
AGAGTGAGT
5' ss Score
7.36
3' ss Seq
TCATTGGACTTTCTTGCCAGGGT
3' ss Score
6.33
Exon sequences
Seq C1 exon
GGCTCAAACTTCCAGATTTCCAGGATTCTATCTTTGAGTATTTCAACACTGCTCCTCTTGCACATGATCTGACTTTTAGA
Seq A exon
GGTTTACTGGGTGGGAAATGATCATTTGTGTTCCTCCTGTCTGTTACACCAAGGACTCGCTCTCTTCCTCATCTGCATCTTCTCTGCTAG
Seq C2 exon
CCTTGTGGGAGGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021279-36-41,36-40,36-39-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.061 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types