MmuEX0010403 @ mm10
Exon Skipping
Gene
ENSMUSG00000021279 | Cdc42bpb
Description
CDC42 binding protein kinase beta [Source:MGI Symbol;Acc:MGI:2136459]
Coordinates
chr12:111308108-111311566:-
Coord C1 exon
chr12:111311487-111311566
Coord A exon
chr12:111309463-111309513
Coord C2 exon
chr12:111308108-111308197
Length
51 bp
Sequences
Splice sites
3' ss Seq
CTCCTGTCTGTTACACCAAGGAC
3' ss Score
3.68
5' ss Seq
GACGTAAGT
5' ss Score
10.93
Exon sequences
Seq C1 exon
GGCTCAAACTTCCAGATTTCCAGGATTCTATCTTTGAGTATTTCAACACTGCTCCTCTTGCACATGATCTGACTTTTAGA
Seq A exon
GACTCGCTCTCTTCCTCATCTGCATCTTCTCTGCTAGCCTTGTGGGAGGAC
Seq C2 exon
ACCAGCTCAGCTAGTGACCAGGAAACACAGGCTTCAAAGATGGACTTGTCCCCATCAGTGTCTGTAGCCACGAGCACAGAGCAGCAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021279_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.061 A=0.000 C2=0.933
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSMUST00000041965fB919
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCAAACTTCCAGATTTCCAGGA
R:
GGCTACAGACACTGATGGGGA
Band lengths:
148-199
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types